Dr Thomas Drake
- Centre for Medical Informatics, Usher Institute
- Department of Clinical Surgery
Contact details
- Email: t.drake@ed.ac.uk
Background
Tom is currently a Surgical Trainee in the South East of Scotland. He is a research fellow within the Usher Institute Centre for Medical Informatics and clinical lecturer at the Cancer Research UK Scotland Institute. His principal research interest is focussed around improving outcomes and experiences for patients who need surgery and have cancer. To do this, he uses large-datasets to look at how cancer can be detected at an early stage and in identifying how specific mutations contribute to cancer growth and therapy resistance.
Summary of Research
- Understanding treatment resistance in cancer - Investigating how specific mutations in DNA lead to liver cancer in preclinical models. This work focusses on generating large, multi-omic datasets (genomic, transcriptomic, metabolomic and spatial) to understand the tumour microenvironment in liver cancer and developing ways to test new therapeutic targets through approaches such as in-vivo gene editing.
- Using large datasets to detect cancer early - The most important way to improve cancer outcomes is prevention and early detection. Doing this effectively and quickly is crucial, to maximise the benefits as new technologies and tests develop. These research studies can be complex and require large numbers of participants. As part of the Edinburgh Data Driven Innovation Initiative, datasets from healthcare and administrative data are being linked together to identify who is at the highest risk of developing cancer and provide large, high-quality datasets to evaluate new cancer tests and support efficient clinical trials.
- Research relevant to local and global communities - Working together with local and global communities to make research more useful and representative. This is particularly important in cancer research, where poor outcomes are closely linked with inequalities and deprivation. Locally, working with community healthcare providers and charities to better understand healthcare needs and co-design research. Globally, with the NIHR Unit on Global Surgery (https://www.globalsurgeryunit.org/), a collaborative network undertaking research to improve surgical outcomes after cancer surgery.
Qualifications
- Membership of the Royal College of Surgeons of Edinburgh (MRCS), 2024
- Doctor of Philosophy (PhD), University of Glasgow, 2023 - Cheine Medal (Edinburgh) and Best PhD prize (Glasgow)
- Bachelors of Medicine and Surgery (MBChB), University of Sheffield, 2016
- Bachelors of Medical Science (BMedSci), University of Sheffield, 2013
Responsibilities & affiliations
- Honorary Clinical Lecturer, School of Cancer Sciences, University of Glasgow
- Course Tutor, HealthyR - R for healthcare data science
- Academic Surgery Module BMedSci in Surgical Sciences
- Edinburgh Surgery Online Masters Statistics Tutor
- Peer review for MRC, ESPRC, STFC, NIHR (HTA, HSDR, RfPB), International Alliance for Cancer Early Detection and Cancer Research UK funding panels
- Peer review for Lancet family, Annals of Surgery, British Journal of Surgery, British Journal of Cancer, PloS Medicine and HPB journals
- Editor, Cochrane Collaboration
-
More research needed in mesh hiatal hernia repair?: Comment on Analatos et al. and trial sequential analysis
(2 pages)
In:
British Journal of Surgery, vol. 110, pp. 381-382
DOI: https://doi.org/10.1093/bjs/znad001
Research output: Contribution to Journal › Letter (Published) -
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study
In:
PLoS Medicine, vol. 20, pp. e1004086
DOI: https://doi.org/10.1371/journal.pmed.1004086
Research output: Contribution to Journal › Article (Published) -
Absent expansion of AXIN2+ hepatocytes and altered physiology in Axin2CreERT2 mice challenges the role of pericentral hepatocytes in homeostatic liver regeneration
In:
Journal of Hepatology
DOI: https://doi.org/10.1016/j.jhep.2023.01.009
Research output: Contribution to Journal › Article (E-pub ahead of print) -
Extracorporeal carbon dioxide removal in acute hypoxaemic respiratory failure: a systematic review, Bayesian meta-analysis and trial sequential analysis
In:
European Respiratory Review, vol. 31
DOI: https://doi.org/10.1183/16000617.0030-2022
Research output: Contribution to Journal › Review article (Published) -
Hepatic glutamine synthetase controls N5-methylglutamine in homeostasis and cancer
In:
Nature Chemical Biology
DOI: https://doi.org/10.1038/s41589-022-01154-9
Research output: Contribution to Journal › Article (E-pub ahead of print) -
Educational impact and recommendations from implementation of student-led clinical trial recruitment: a mixed-methods study
In:
Postgraduate Medical Journal
DOI: https://doi.org/10.1136/pmj-2022-142122
Research output: Contribution to Journal › Article (E-pub ahead of print) -
The impact of preoperative oral nutrition supplementation on outcomes in patients undergoing gastrointestinal surgery for cancer in low- and middle-income countries: a systematic review and meta-analysis
In:
Scientific Reports, vol. 12
DOI: https://doi.org/10.1038/s41598-022-16460-4
Research output: Contribution to Journal › Article (Published) -
Procalcitonin Is Not a Reliable Biomarker of Bacterial Coinfection in People With Coronavirus Disease 2019 Undergoing Microbiological Investigation at the Time of Hospital Admission
In:
Open forum infectious diseases, vol. 9
DOI: https://doi.org/10.1093/ofid/ofac179
Research output: Contribution to Journal › Article (Published) -
Comparison of UK paediatric SARS-CoV-2 admissions across the first and second pandemic waves
In:
Pediatric Research
DOI: https://doi.org/10.1038/s41390-022-02052-5
Research output: Contribution to Journal › Article (E-pub ahead of print) -
Prospective validation of the 4C prognostic models for adults hospitalised with covid-19 using the ISARIC WHO Clinical Characterisation Protocol
In:
Thorax
DOI: https://doi.org/10.1136/thoraxjnl-2021-217629
Research output: Contribution to Journal › Article (Published) -
Remote diagnosis of surgical-site infection using a mobile digital intervention: a randomised controlled trial in emergency surgery patients.
In:
npj Digital Medicine
DOI: https://doi.org/10.1038/s41746-021-00526-0
Research output: Contribution to Journal › Article (Published) -
Genome-wide Analysis Identifies Novel Gallstone-susceptibility Loci Including Genes Regulating Gastrointestinal Motility
(33 pages)
In:
Hepatology, pp. 1-33
DOI: https://doi.org/10.1002/hep.32199
Research output: Contribution to Journal › Article (E-pub ahead of print) -
A prenylated dsRNA sensor protects against severe COVID-19
In:
Science
DOI: https://doi.org/10.1126/science.abj3624
Research output: Contribution to Journal › Article (E-pub ahead of print) -
Genome-Wide Association Study of Non-Alcoholic Fatty Liver Disease using Electronic Health Records
In:
Hepatology Communications
DOI: https://doi.org/10.1002/hep4.1805
Research output: Contribution to Journal › Article (Published) -
Long Covid in adults discharged from UK hospitals after Covid-19: A prospective, multicentre cohort study using the ISARIC WHO Clinical Characterisation Protocol
In:
The Lancet Regional Health Europe
DOI: https://doi.org/10.1016/j.lanepe.2021.100186
Research output: Contribution to Journal › Article (E-pub ahead of print) -
Characterisation of in-hospital complications associated with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol UK: A prospective, multicentre cohort study
In:
The Lancet, vol. 398
DOI: https://doi.org/10.1016/S0140-6736(21)00799-6
Research output: Contribution to Journal › Article (Published) -
Non-steroidal anti-inflammatory drug use and outcomes of COVID-19 in the ISARIC Clinical Characterisation Protocol UK cohort: a matched, prospective cohort study
In:
The Lancet Rheumatology, vol. 3, pp. e498-e506
DOI: https://doi.org/10.1016/S2665-9913(21)00104-1
Research output: Contribution to Journal › Article (Published) -
Effect of Hepatocellular Carcinoma Surveillance Programmes on Overall Survival in a Mixed Cirrhotic UK Population:
A Prospective, Longitudinal Cohort Study
In:
Journal of Clinical Medicine
DOI: https://doi.org/10.3390/jcm10132770
Research output: Contribution to Journal › Article (Published) -
Recovery from Covid-19 critical illness: a secondary analysis of the ISARIC4C CCP-UK cohort study and the RECOVER trial
DOI: https://doi.org/10.1101/2021.06.15.21258879
Research output: › Working paper (Published) -
Co-infections, secondary infections, and antimicrobial use in patients hospitalised with COVID-19 during the first pandemic wave from the ISARIC WHO CCP-UK study: a multicentre, prospective cohort study
In:
The Lancet Microbe
DOI: https://doi.org/10.1016/S2666-5247(21)00090-2
Research output: Contribution to Journal › Article (E-pub ahead of print)
A full publication list can be found here: https://scholar.google.com/citations?hl=en&user=jPThi00AAAAJ