Alastair Kilpatrick | The University of Edinburgh

Bioinformatician

Tel: 0131 651 9550
Email: alastair.kilpatrick@ed.ac.uk

Street: Centre for Regenerative Medicine
Institute for Regeneration and Repair
The University of Edinburgh
Edinburgh BioQuarter
5 Little France Drive
City: Edinburgh
Post code: EH16 4UU

Biography

Background

Honorary Research Fellow at Imperial College London (2022-present)
Bioinformatician at Centre for Regenerative Medicine, University of Edinburgh (2017-present)
Postdoctoral Associate at University of California, San Diego (2014-2017)
PhD in Informatics, University of Edinburgh (2014)

Publications

Brain matters: Unveiling the Distinct Contributions of Region, Age, and Sex to Glia diversity and CNS Function 22 May 2023 In: Acta Neuropathologica Communications
DOI: https://doi.org/10.1186/s40478-023-01568-z
Research output: Contribution to Journal › Article (Published)
Protocol to analyze and validate transcriptomic changes in PDGFRβ-KO mesenchymal stem cell osteogenic potential in the mouse embryo 17 Mar 2023 In: STAR Protocols, vol. 4
DOI: https://doi.org/10.1016/j.xpro.2022.102016
Research output: Contribution to Journal › Article (Published)
Senolytic treatment preserves biliary regenerative capacity lost through cellular senescence during cold storage (16 pages) 7 Dec 2022 In: Science Translational Medicine, vol. 14
DOI: https://doi.org/10.1126/scitranslmed.abj4375
Research output: Contribution to Journal › Article (Published)
p57Kip2 regulates embryonic blood stem cells by controlling sympathoadrenal progenitor expansion 4 Aug 2022 In: Blood, vol. 140, pp. 464-477
DOI: https://doi.org/10.1182/blood.2021014853
Research output: Contribution to Journal › Article (Published)
PDGFRβ+ cells play a dual role as hematopoietic precursors and niche cells during mouse ontogeny 19 Jul 2022 In: Cell Reports, vol. 40
DOI: https://doi.org/10.1016/j.celrep.2022.111114
Research output: Contribution to Journal › Article (Published)
Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia 27 Jun 2022 In: Bioinformatics
DOI: https://doi.org/10.1093/bioinformatics/btac236
Research output: Contribution to Journal › Article (Published)
Human biliary epithelial cells from discarded donor livers rescue bile duct structure and function in a mouse model of biliary disease 3 Mar 2022 In: Cell Stem Cell
DOI: https://doi.org/10.1016/j.stem.2022.02.006
Research output: Contribution to Journal › Article (Published)
Failures of nerve regeneration caused by aging or chronic denervation are rescued by restoring Schwann cell c-Jun 21 Jan 2021 In: eLIFE, vol. 10
DOI: https://doi.org/10.7554/eLife.62232
Research output: Contribution to Journal › Article (Published)
TWEAK/Fn14 signalling promotes cholangiocarcinoma niche formation and progression. 19 Nov 2020 In: Journal of Hepatology, vol. n/a, pp. 1-72
DOI: https://doi.org/10.1016/j.jhep.2020.11.018
Research output: Contribution to Journal › Article (E-pub ahead of print)
Ten simple rules for designing learning experiences that involve enhancing computational biology Wikipedia articles 14 May 2020 In: PLoS Computational Biology
DOI: https://doi.org/10.1371/journal.pcbi.1007868
Research output: Contribution to Journal › Article (Published)
The International Society for Computational Biology and WikiProject Computational Biology: celebrating 10 years of collaboration towards open access (2 pages) 1 Aug 2017 In: Bioinformatics, vol. 33, pp. 2429-2430
DOI: https://doi.org/10.1093/bioinformatics/btx388
Research output: Contribution to Journal › Review article (Published)
The 5th ISCB Wikipedia Competition: Coming to a Classroom Near You? 29 Dec 2016 In: PLoS Computational Biology, vol. 12
DOI: https://doi.org/10.1371/journal.pcbi.1005235
Research output: Contribution to Journal › Editorial (Published)
Message from the ISCB: The 5th ISCB Wikipedia competition: coming to a classroom near you? 19 Dec 2016 In: Bioinformatics
DOI: https://doi.org/10.1093/bioinformatics/btw671
Research output: Contribution to Journal › Editorial (Published)
Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee) 13 May 2016 In: PLoS Computational Biology, vol. 12, pp. e1004943
DOI: https://doi.org/10.1371/journal.pcbi.1004943
Research output: Contribution to Journal › Review article (Published)
Dizzy-Beats: a Bayesian Evidence analysis tool for systems biology 30 Jan 2015 In: Bioinformatics
DOI: https://doi.org/10.1093/bioinformatics/btv062
Research output: Contribution to Journal › Article (Published)
Stochastic EM-based TFBS motif discovery with MITSU (9 pages) 15 Jun 2014 In: Bioinformatics, vol. 30, pp. 310-318
DOI: https://doi.org/10.1093/bioinformatics/btu286
Research output: Contribution to Journal › Article (Published)
MCOIN: a novel heuristic for determining transcription factor binding site motif width (12 pages) 27 Jun 2013 In: Algorithms for Molecular Biology, vol. 8
DOI: https://doi.org/10.1186/1748-7188-8-16
Research output: Contribution to Journal › Article (Published)

View all 17 publications on Research Explorer

This article was published on 6 Jun, 2023