Precision Medicine Doctoral Training Programme

Functional brain connectivity to reveal the relationships between seizures, cognition and behaviour in children with epilepsy

Project Details - Functional brain connectivity to reveal the relationships between seizures, cognition and behaviour in children with epilepsy

Supervisor(s): Dr Richard Chin & Dr Javier Escudero Rodriguez
Centre/Institute: Centre for Clinical Brain Sciences


Epilepsy is one of the most common neurological disorders. It causes devastating effects on the quality of life of its patients, which are particularly dire in the case of children. This PhD project will apply mathematical time series analysis tools to electroencephalogram (EEG) recordings to better understand the causes of cognitive and behavioural impairments in children with epilepsy. This is an exciting collaboration between clinicians and engineers, it will benefit from the availability of already collected clinical datasets at the Centre for Clinical Brain Sciences, and it will train the PhD student in a suite of quantitative methods that includes computational and digital signal analysis tools, and connectivity analysis.

The EEG is highly relevant to epilepsy since it is routinely used in the clinic to detect ictal activity. However, epilepsy leads to other much more subtle effects in the EEG than seizures (van Diessen et al., 2016). Previous EEG studies in children with epilepsy have shown a relationship between impairments, frequent epileptic discharges and severity of the background abnormality in EEGs but whether this relationship is epilepsy specific or not has not been investigated yet. A prompt identification and monitoring of comorbid cognitive and behavioural impairments is urgently needed (Braun, 2017).

The fact that epilepsy might affect non-local brain connections, leading to diffuse damage, might explain some of the developmental problems in children with epilepsy (Stam, 2014). This suggests that computationally driven connectivity analysis of EEG activity in children with epilepsy is a prime candidate to reveal this currently hidden relationships between epilepsy, impairments and EEG abnormalities. In this sense, it is important to emphasise that the feasibility of this project is strengthen by pilot results by our team where we have found modest, but robust, correlations between basic classical EEG features and cognitive scores (Kinney-Lang et al., 2017).

Thus, we propose to analyse already available resting-state EEG activity from children with epilepsy. All analysis will be appropriately cross-validated and will benefit from the close supervision of both clinical (RC) and an engineering (JER) supervisors. First, the EEG datasets will be preprocessed following state-of-the-art approaches. Clinically relevant events will be delineated and classical EEG analyses (e.g., power, average ERPs, etc.) will be applied as benchmarks to the more advanced connectivity investigations. Then, we will implement state-of-the-art functional connectivity analysis. We will assess the significance of the results, compare them with classical tools, and discuss the relevance of findings.

We expect to achieve a rigorous validation of the techniques and an increased understanding of this major aspect of epilepsy. Our approach agrees with the currently view of epilepsy as a network disease (Stam, 2014). Due to the routine use of EEG to screen for ictal activity in epilepsy, we are confident that our methodology could find a rapid acceptance in the field.


We hypothesise that functional connectivity analysis of routinely collected EEGs in children with epilepsy will reveal EEG markers of impairments by exploiting diffuse brain connectivity changes caused by the disease.

  1. Apply quantitative methods to characterise the EEG activity in children with epilepsy.
  2. Compare traditional methods with new approaches based on connectivity.
  3. Identify potential markers of impairments in the EEG of children with epiplesy.

Training outcomes

  • Being able to evaluate functional brain connectivity from time series.
  • Being able to analyse both visually and quantitative EEG recordings.
  • Being able to run statistically analysis of multivariate features from diverse populations samples.
  • Being able to manage diverse data sources of both clinical and non-clinical origin.
  • Being able to apply clinical research protocols and regulations.


  1. Braun, K.P.J., 2017. Preventing cognitive impairment in children with epilepsy. Curr. Opin. Neurol. 30, 140–147. doi:10.1097/WCO.0000000000000424
  2. Kinney-Lang, E., Hunter, M., Yoong, M., Chin, R., Escudero, J., 2017. Network analysis of electroencephalogram (EEG) recordings to reveal markers of cognitive impairment in children with epilepsy. Presented at the 43rd British Paediatric Neurology Association Annual Conference, Cambridge, UK.
  3. Stam, C.J., 2014. Modern network science of neurological disorders. Nat. Rev. Neurosci. 15, 683–695. doi:10.1038/nrn3801
  4. van Diessen, E., Otte, W.M., Stam, C.J., Braun, K.P.J., Jansen, F.E., 2016. Electroencephalography based functional networks in newly diagnosed childhood epilepsies. Clin. Neurophysiol. 127, 2325–2332. doi:10.1016/j.clinph.2016.03.015

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  • The deadline for 18/19 applications is 5pm on Monday 16th April 2018.
  • Please note all applications for the Precision Medicine DTP should be submitted to University of Edinburgh, even those applying for a project at the University of Glasgow.
  • Applicants must apply to a specific project, ensure you include details of the project you are applying to in Section 4 of your application. We encourage you to contact the primary supervisor prior to making your application.  
  • As you are applying to a specific project, you are not required to submit a Research Proposal as part of your application. 
  • Please ensure you upload as many of the requested documents as possible at the time of submitting your application.