Global Academy of Agriculture and Food Systems

Modelling for Pandemic Preparedness: A Need for a One Health Approach

Professor Lisa Boden, Senior Lecturer in Population Medicine & Animal Health Policy and Deputy Director of EPIC

The UK government stated strategy is to manage the COVID-19 pandemic “led by the science”. However, calls for more transparency about what this really means are getting louder.


Article from SEFARI ( on behalf of EPIC (the Centre of Expertise on animal disease outbreaks;, part of the Scottish Government Strategic Portfolio on environment, land, agriculture, food and rural communities research.


Mathematical models and simulations are driving the world’s response to COVID-19. Epidemiological modelling is by no means the only source of intelligence that politicians are taking into account when decision-making about our health, but articles like these: “Behind the Virus Report That Jarred the U.S. and the U.K. to Action” and “The battle at the heart of British science over coronavirus” make it particularly eye-catching.


In order to respond to the demands of agile governance, mathematical models have become a dominant source of policy evidence and a standard decision-support tool during various stages of disease management at strategic, tactical and operational policy levels. Other types of normative (value-driven) exploratory approaches may better identify and control the influence of longer-term drivers of disease spread. The latter include bio-social, political and economic determinants like poverty, food security, universal healthcare, climate change, urbanization, which are particularly important in developing countries where there are already challenges meeting sustainable development goals (SDGs). However, these approaches have not gained the same international policy foothold as quantitative mathematical models because they cannot be expediently deployed in response to a ‘securitised’ emergency and as qualitative instruments, may be perceived (incorrectly) by the public and policy-makers to provide insufficient or less convincing evidence in the face of scientific uncertainty.


Simulation models have been used to explore disease transmission and disease control strategies in other emergency outbreak events - but not without some controversy: the Foot-and-Mouth Disease (FMD) outbreak in 2001 was one of the first; models for SARS, Ebola, Zika subsequently followed. Indeed, the WHO contingency plans for avian influenza and advice for countries regarding national pandemic preparedness response plans are based on a mathematical model of H5N1 - purportedly the “largest-scale detailed epidemic micro-simulation” ever developed. This model is not dissimilar to any other mathematical model in that it inescapably incorporates numerous critical uncertainties. Not least of these are the assumptions about capabilities to detect, report and trace new cases, and compliance with effective disease mitigation measures. Until 4 weeks ago (March 17), implementing a disease control strategy which involves large-scale quarantine and social distancing measures was a purely theoretical exercise; until now, the assumptions and projected outcomes of this model have remained unchallenged and unverified in the absence of other “hard” ground-truthed evidence.

Images - The usually bustling Royal Mile and Princes Street in Edinburgh, following the declaration of a “lockdown” to control the spread of COVID-19.
Images - The usually bustling Royal Mile and Princes Street in Edinburgh, following the declaration of a “lockdown” to control the spread of COVID-19.

The Imperial College team, responsible for this model, has come under unenviable and intense scrutiny at a time when they are working under unprecedented pressure to help inform better decisions. It is very difficult to model disease spread at an early stage in the outbreak, when uncertainty is high because data (on location and number of infected people, and their contact networks) are absent, scarce or not specific to the local context.


There are no agreed or formal standards by which models may be judged to be “fit-for-purpose” for decision-making.  Until the epidemiological modelling community takes the lead, the same challenges are likely to continue to (re)emerge about the use of models during outbreaks. Among the most important are: 

  • Needing more data, but the right kind: Quantity, quality and speed of data access/sharing are key challenges; real-time data collection and sharing is therefore important. In this outbreak, testing and contact tracing of infected cases would be valuable in reducing uncertainty. When data are scarce, specific model assumptions may be particularly influential on model outcomes, so modellers need to communicate these assumptions explicitly to decision-makers and take steps to ensure there is mutual understanding.  This is difficult. Models are complex and the language is foreign, so they are sometimes presented as “black boxes”. Many decision-makers will understandably not have the time, nor the tools to hand to scrutinise these critically or independently.
  • Overlooking and underestimating the importance of communicating uncertainty:  The identification of uncertainty or ambiguity around scientific outcomes generates a responsibility for scientists and policy-makers to close or communicate the knowledge gaps. Ignoring the effects of uncertainty on model results could lead to less than optimal decision-making.  Alternatively, decisions to intervene (or not) derived from modelling advice which communicates uncertainty poorly may merely be equivalent to those arising out of the precautionary principle, in which case the modelling effort would be largely superfluous.
  • Failing to mind the gap in ethical oversight: There is no ethical guidance for model-making. However, offering models as evidence for policy means that modellers’ in silico explorations result in real-world outcomes which positively and/or negatively affect people’s lives and livelihoods. Developing a useful ethical framework for future use will depend on: (i) the creation of science–policy partnerships to mutually define policy questions and communicate results; (ii) harmonized international standards for model development; (iii) strong data stewardship and (iv) improvement of traceability and transparency via searchable archives of policy-relevant models.
  • Falling into the legitimacy trap: It is easy for models to acquire an over-stated sense of “legitimacy” as evidence. However, modellers themselves acknowledge that models are approximate summaries of our knowledge of the real world and shouldn’t be used in isolation, and definitely not in the absence of other, diverse, sources of expert opinion and intelligence obtained “on the ground”, which are vital in order to identify and challenge blindspots in thinking.

After the UK FMD outbreak in 2001, the animal health sector learned some important lessons about the use of models in outbreak disease emergencies.  EPIC, Scottish Government’s Centre of Expertise on Animal Disease Outbreaks was created as a result of a wider recognition that the UK needed to improve disease outbreak preparedness.  EPIC exemplifies a model of research provision for policy-making that utilizes academic partners, working closely with Government policy-makers, to contribute to evidence-based decision-making for outbreak science. This framework allows scientists in EPIC to pivot quickly to respond to emerging and novel animal/zoonotic disease emergencies in a timely way, potentially as soon as they arise. Transparent routes of communication with government underpin EPIC’s functionality. A unique, but important feature of EPIC is its specific role for knowledge-brokers who are embedded in government and who are fluent in different disciplinary expertise in order to bridge translation gaps between modellers and policy-makers. Impacts go beyond academic metrics and include broader conceptual changes about how scientists and policy-makers interact, moving further toward co-production.


Strengthening multi-sectoral and multidisciplinary links through academic-policy-industry consortia such as EPIC exemplify a “One Health” approach. The latter is vital to de-risking “human, animal and environmental health”. Indeed, One Health was borne out of a "global anxiety" about the emergence of a zoonotic pandemic – and it provided a framework in which the intergovernmental organisations (FAO, OIE, WHO and World Bank) could work closely together to address this threat. More than 15 years have passed since then, and we are now in the midst of that well-anticipated global health emergency. Yet in the UK at least, a coordinated plan to operationalise One Health tools and expertise is conspicuously absent from the current policy response.  Scientists working to address “public and animal health threats and the ecosystems that interlink them”, could prove to be critical allies and sources of expert and experienced support for our public health colleagues.  There is no better time than now, to lean on us and let us share the load.


Acknowledgments to Charles Bestwick, Iain McKendrick and Philip Skuce for their contributions and ideas.

Images (Edinburgh) - Sue McKendrick, 2020 and (Lisa Boden) - Michelle Wilson-Chalmers, 2018.


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