Software releases
View our recent software releases.
Software developed within the Row Fogo Centre to facilitate neuroimaging analysis.
IMPORTANT NOTE: You are free to use developed by us tools for research purposes. Hovewer, please include adequate citations and acknowledgments whenever you present or publish results that are based on it.
Probabilistic Deep Learning with Adversarial Training and Volume Interval Estimation - Better Ways to Perform and Evaluate Predictive Models for White Matter Hyperintensities Evolution
Authors: Muhammad Febrian Rachmadi (RIKEN Center for Brain Science, Japan)
Topics: deep-neural-networks deep-learning brain-mri wmh-segmentation wmhs
GitHub link (external website)
Algorithm developed as a part of collaborathion between RIKEN Center for Brain Science (Japan), School of Informatics, and the Row Fogo Centre fore Research into Ageing and the Brain, at The University of Edinburgh (UK).
Read more about RIKEN collaboration
Ischaemic Stroke Lesions Segmentation using Convolutional Neural Networks
Authors: Carlos Uziel Perez Malla MSc. work supervised by Maria del C. Valdés Hernandez and Taku Komura
GitHub link (external website)
Limited-One Time Sample-Irregularity Age Map for GPU (LOTS-IAM GPU)
Authors: Febrian Rachmadi, Maria del C. Valdés Hernandez and Taku Komura
GitHub link (external website)
Dilated Saliency UNet
Authors: Yunhee Jeong MSc work supervised by M. Febrian Rachmadi, Maria del C. Valdés Hernández and Taku Komura
GitHub link (external website)
Dynamic Brain MRI Analysis
Authors: José Bernal Moyano and Maria del C. Valdés Hernández
GitHub link (external website)
Functions for processing DCE-MRI data and performing simulations
Author: Dr Michael Thrippleton
GitHub link (external website)
Fit T2 or T2 Star MRI data and create parameters maps
Author: Dr Michael Thrippleton
GitHub link (external website)
Functions for processing MT Saturation images
Author: Dr Michael Thrippleton
GitHub link (external website)
Process T1 mapping using DESPOT1-HIFI or Variable Flip Angle methods
Author: Dr Michael Thrippleton
GitHub link (external website)
T1 mapping using IRSE method
Author: Dr Michael Thrippleton
GitHub link (external website)
See also
Row Fogo Centre - Our research
Vascular Assessment and Measurement Platform for Images of the REtina (VAMPIRE) algorithms
Algorithms developed within the VAMPIRE project, related to quantification of retinal vessel properties.