Overview
This group is working to develop a software infrastructure and novel applications which support our laboratory research in Pathway Biology.
We have developed an integrated approach involving the combined application a a range of resources to basic-science and clinical problems.
Applications & Databases
Our databases and pathways tools provide a powerful platform for understanding and interpreting high-throughput data generated by our scientific and clinical research activities.
Biolayout
Biolayout Express3D is designed for the visualisation, clustering and analysis of large network graphs in two and three dimensional space derived primarily from biological systems.
EPCC
We have collaborated with the Edinburgh Parallel Computing Centre (EPCC) on several occasions to successfully deliver applications requiring both biological and HPC specialist knowledge.
GPX Macrophage Atlas
The GPX Macrophage Atlas (GPX-MEA) is a web resource for expression based studies of a range of macrophage cell types following treatment with pathogens and immune modulators.
GPX
In addition to the macrophage-specific data-set, GPX also contains published datasets from a diverse range of transcription profiling studies.
PDQ Wizard
PDQ Wizard is a web based tool that enables the rapid classification and prioritisation of large lists of gene and protein identifiers using the PubMed biomedical literature database.
SPRINT
The Simple Parallel R INTerface is a framework that provides an easy access to high performance computing for the analysis of high thoughput post genomic data using the statistical programming language R.
This article was published on Dec 1, 2011